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I think you have come across the best answer to it, using javascript to figure out the resolution and going from there. Your other option I guess would be to turn off all scroll bars on every page or make sure that every page on your site will scroll. You could do that by setting the height of the table to be 101% or something like that.
I am curious as to why you are worried about this, though... Most people won't be playing with the size of their windows back and forth to see the "jump" on the same page, and I don't really know of anyone that says it bothers them when it goes from one page to the next. That's just my opinion, though.
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